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Thomas De Schampheleire

docs: upgrade: recreating git hooks can only be done after starting Kallithea

The upgrade instructions lets the user click on UI links while Kallithea is
not yet started. Move those instructions down to fix the flow.

[run]
omit =
    # the bin scripts are not part of the Kallithea web app
    kallithea/bin/*
    # we ship with no active extensions
    kallithea/config/rcextensions/*
    # dbmigrate and paster_commands are not part of the Kallithea web app
    kallithea/lib/dbmigrate/*
    kallithea/lib/paster_commands/*
    # the tests themselves should not be part of the coverage report
    kallithea/tests/*
    # the scm hooks are not run in the kallithea process
    kallithea/config/post_receive_tmpl.py
    kallithea/config/pre_receive_tmpl.py

[paths]
source =
    kallithea/
    **/workspace/*/kallithea